EGAF00005725281 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725281
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29990645
Sequences flagged as poor quality	0
Sequence length	16
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAA	1273011	4.244693636965794	No Hit
CAAAAAAAAAAAAAAA	544374	1.81514602303485	No Hit
GGGGGGGGGGGGGGGG	276518	0.9220141814222402	No Hit
CCAAAAAAAAAAAAAA	252850	0.8430962388438127	No Hit
TAAAAAAAAAAAAAAA	116039	0.3869173203844065	No Hit
ACAAAAAAAAAAAAAA	85335	0.28453872866022056	No Hit
CTAAAAAAAAAAAAAA	84799	0.28275150467754195	No Hit
TCAAAAAAAAAAAAAA	80043	0.2668932262043714	No Hit
NNNNNNNNNNNNNNNN	58104	0.1937404147193233	No Hit
TCCAAAAAAAAAAAAA	58006	0.1934136461553261	No Hit
GCAAAAAAAAAAAAAA	55089	0.1836872798167562	No Hit
ACCAAAAAAAAAAAAA	53371	0.17795882682749906	No Hit
GAAAAAAAAAAAAAAA	52417	0.1747778348881793	No Hit
CCCAAAAAAAAAAAAA	49361	0.16458799068842966	No Hit
ATAAAAAAAAAAAAAA	40311	0.13441191411521825	No Hit
CTCAAAAAAAAAAAAA	35045	0.11685310536002143	No Hit

Can't analyse adapters as read length is too short

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCCATC	24445	9.8459425	9
CAACGAC	18700	9.771698	10
CCCATCT	25085	9.750495	10
AAGCGAG	31670	9.744038	9
AAACTGC	13740	9.735991	10
AGCGAGT	31625	9.720213	10
AGCTTCA	34205	9.713406	9
CGACTTA	17215	9.708025	9
ACACTGA	14200	9.705858	10
AACTCCG	18875	9.696997	10
GCTTCAC	34150	9.688307	10
CACACTG	14310	9.676421	9
CCTCTCA	22920	9.671962	9
CAACGTT	19330	9.660189	10
CCAACGT	19385	9.640261	9
CCGAACA	16495	9.631812	10
CACCGTG	9545	9.629698	10
GACCCAT	6880	9.623181	8
GTACGTG	27435	9.618896	10
TCCGAAC	16530	9.614186	9