EGAF00005725293 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725293
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29984395
Sequences flagged as poor quality	0
Sequence length	42
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATC	311600	1.039207227626237	TruSeq Adapter, Index 9 (100% over 42bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA	89780	0.2994224162268407	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACA	48573	0.1619942640163325	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAG	38917	0.12979084620516773	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC	37772	0.1259721932024975	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT	35727	0.11915197888768474	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAA	31630	0.10548820478118702	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCA	30815	0.10277012425963573	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACT	30398	0.10137940085167634	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	39355	35.040234	1
ATCGGAA	40085	34.658043	2
CGTCTGA	41250	32.504776	16
ACGTCTG	41625	32.302856	15
CACGTCT	42190	32.02716	14
AGTCACG	41715	31.753773	28
TCACGAT	42135	31.471535	30
ACACGTC	43250	31.271246	13
CACGATC	42835	31.011862	31
CGATCAG	43065	30.821053	33
ACGATCA	43350	30.76365	32
CACACGT	44100	30.676575	12
TCAGATC	37585	30.621222	36
AGAGCAC	44785	30.604847	8
AGCACAC	44800	30.406174	10
GAGCACA	45280	30.198874	9
ATCAGAT	43590	30.1483	35
CGGAAGA	47020	30.017136	4
GCACACG	45185	29.975906	11
TCTGAAC	44950	29.76106	18