EGAF00005725297 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725297
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43130345
Sequences flagged as poor quality	0
Sequence length	42
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAA	102671	0.2380481769853684	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACT	81512	0.1889899095404871	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATC	79921	0.1853010913777759	TruSeq Adapter, Index 9 (100% over 42bp)
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAAC	73140	0.16957898203689303	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGT	65933	0.15286916902705044	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCA	61531	0.14266289778113297	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCA	55341	0.12831105338944077	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTC	47523	0.1101846043661371	No Hit
CCGGGGGTTCCCGCCCCCACGGCGCGGGGCGCACGCCACACG	47224	0.10949135695529447	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAA	44452	0.10306432744741552	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	10370	30.489302	1
ATCGGAA	10695	29.734533	2
CGTCTGA	11315	27.2304	16
ACGTCTG	11975	25.909708	15
AGTCACG	12170	25.208208	28
CACGTCT	12730	24.48614	14
TCACGAT	12595	24.358751	30
CGATCAG	12595	24.301798	33
ACGATCA	13025	23.914623	32
CACGATC	13340	23.052427	31
ACACGTC	14825	21.22003	13
TCAGATC	14210	20.451365	36
ATCAGAT	15245	20.04279	35
GATCAGA	15635	19.738503	34
CACACGT	16065	19.615742	12
TCTGAAC	16240	19.316448	18
GCACACG	16805	18.687716	11
AGAGCAC	17095	18.6549	8
AGCACAC	17505	18.310495	10
GAGCACA	17560	18.29414	9