FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005725322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92950584
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA214900.019.3778394
GTCGCCG448750.017.80542294
TCGCCGT326850.017.22725994
GGTCGCC577550.016.65850694
TATACTG438100.016.4350915
GCCGTAT193850.015.68723294
GTATTAG255450.015.4369761
CGTATCA144600.015.11445494
CTATACT295350.015.0219244
TGGTCGC648500.014.98816294
GTATATA593550.014.9265781
GTATAAG255700.014.3741511
GTATTAT439750.014.2044791
TATACAG416450.013.9828275
TTATACT483300.013.964594
GTATTAA415400.013.8830291
GTATAGG194350.013.6395721
GTATAGA277800.013.3152291
TCTATAC279700.013.291913
ATAATAC446950.013.26048853
Produced by FastQC (version 0.11.5)