FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005725326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74271906
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG305050.017.154945
CGCCGTA126250.016.47706294
CTATACT214550.015.5221284
GTATATA373500.015.2894251
TCGCCGT218850.015.23861494
GTCGCCG292900.015.15454494
GTATTAG182550.014.8179721
GTATTAT314800.014.5749811
TTATACT350050.014.438294
GTATTAA301750.014.4271521
TCTATAC199900.014.4022883
GTATAGG136450.014.3519421
TATACAG286150.014.1674655
TGGTCGC400350.014.05637294
GGTCGCC363050.014.01934294
GTATAAG180500.013.89351751
GTATAGA204750.013.6929991
ATAATAC314100.013.41245653
ATTATAC284750.013.3599593
CTAGTAC100850.013.225933
Produced by FastQC (version 0.11.5)