FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005725335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76630807
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG349100.017.1645165
CTATACT237150.014.8441334
GTATATA424900.014.4945351
TTATACT398050.014.4405924
GTATTAG198250.014.2284561
TAATACT371650.014.1132244
CTAATAC215000.013.9470783
ATAATAC348300.013.7101183
GTATTAT347850.013.5964551
GTATAGA220000.013.313281
TATACAG323250.013.28858955
GTATAAG211300.013.2607011
GTATAGG147050.013.1080641
TACACTG383750.013.1040825
TCTATAC222000.013.0838783
ATTATAC328850.012.7916383
CTACACT270050.012.6876014
GTATAAA427350.012.6182591
GTATTAA329200.012.5815991
GTATTAC217850.012.4303871
Produced by FastQC (version 0.11.5)