FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7410714
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGAA500.001702208337.6018754
GCTAGCG1002.99588E-416.449634-35
CGCAATC10200.014.74573594
CCTATCG2651.5675956E-414.1881437
CGTAGCG1000.00566708214.09956372-73
CGACCGC3103.8694612E-513.644469
ACGCAAT13450.013.6288494
CGCGGTT3004.4720276E-412.5351431
CGTCGGT3601.5664377E-411.75050694
CGCCGAT2451.7220427E-611.51004138-39
TACGCCG1659.97611E-411.39350866-67
GCGCGAA1500.006363705310.966104562-63
GGCGTAA7804.2200554E-1010.846621594
CTATCGG4551.1864527E-410.329148
CGCGTCA5053.0070378E-510.2391011
CGAACCG1850.002585323810.16349190-91
ATCGCGA1850.002589379410.161571520-21
GCGTCAG9055.527909E-99.348473
TTCCGCG2809.357023E-59.23201238-39
TCCGTCG2809.3611554E-59.23163810-11
Produced by FastQC (version 0.11.5)