FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15028873
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA397450.08.46871994
TGTAGGG425500.08.41865394
GTGTAGG463950.08.30863994
TCGTGTA510050.08.16597794
CGTGTAG482850.08.119719594
GTCGTGT556500.07.94898494
CGTCGTG611150.07.738153594
GCGTCGT664450.07.704647594
GAGCGTC803000.07.575405694
AGCGTCG723550.07.556111394
AGAGTGT208700.07.52334994
TAGGGAA366400.07.44148794
AGAGCGT879800.07.266782394
AAGAGCG953350.06.760397494
AAGAGTG261250.06.65782994
ATCGGAA1343600.06.539228494
AAAGAGT278200.06.48875494
GAAGAGC1126150.06.261554794
TCGGAAG1304450.06.20933494
AGGGAAA486300.06.19642194
Produced by FastQC (version 0.11.5)