FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12615973
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACCG6253.1194875E-59.0251131
ACGATCG3702.597535E-68.89371288-89
CGTGTAG337900.08.47394494
CGCGCTA2500.00319375268.46173288-89
GTCGTGT390450.08.41721194
TCGTGTA353200.08.41303894
TGTAGGG307000.08.34669694
AGCGTCG509900.08.19734594
GTGTAGG329450.08.13470594
TAGGGAA265350.08.13298794
CGTACGA2650.0054093717.98121578-79
CGTCGTG427950.07.95430194
GTAGGGA291350.07.63312994
CGACCGT5052.7124843E-67.44466348-49
GCGTCGT464350.07.290268494
GAGCGTC562450.07.13888694
CATACGA11201.6559788E-67.13376339
AGAGTGT153450.07.10849494
AGAGCGT614500.07.10039694
TAACCGG6650.00513333877.0679812
Produced by FastQC (version 0.11.5)