FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9324419
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA365400.08.38662694
AGAGTGT180150.08.32270794
TAGGGAA336400.08.27130394
AAAGAGT233650.08.02629994
CGTGTAG446300.07.940588594
TCGTGTA471500.07.68565594
GTGTAGG426350.07.60660894
AAGAGTG224550.07.556180594
TGTAGGG392200.07.47799694
GTCGTGT514450.07.372904394
CGTCGTG558650.07.269125594
GAGTGTA57550.07.186965594
AGCGTCG653650.07.140229794
GCGTCGT601800.06.935360494
GGAAAGA354800.06.676596694
GGGAAAG373300.06.584941494
GAAAGAG318900.06.573377694
AGGGAAA393400.06.571077394
GAGCGTC711650.06.518668794
AAGAGCG821750.06.40599494
Produced by FastQC (version 0.11.5)