FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5978676
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAACGCG250.001701892937.60348586-87
CTAACCG2451.9651452E-719.1848073
CGCGATT650.00804513618.0761810-11
TTCGCGT2001.4676698E-714.1010748-49
TATCGTA2350.00101843414.0007114
GCGAAAT26300.013.58198594
CGGTTCG1453.3649305E-412.96498318-19
TGCGAAA34500.012.53355194
CGAAATC26450.012.43877994
ACCGCTA5302.6409907E-812.415831
CGCGGAT3501.20455166E-412.086433
GTACGGT3601.5665941E-411.7503025
GCGTTAA2800.003802241811.75020394
CCTATCG2850.00433939711.5441565
GCGCAAT2054.1174873E-511.46294316-17
TCGCGAT2050.006038936311.4629439
TCGCCGA3702.0213192E-411.43263156
GTGCGAA38100.011.34927894
TTCGCGG2950.005612024611.1527366
TAACCGG3000.006358125710.9672244
Produced by FastQC (version 0.11.5)