FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17706874
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTACG950.001305650924.735791
CGTCGTG354800.08.52073994
TCGTGTA289750.08.32422594
CGTGTAG286300.08.3095894
GTCGTGT319000.08.03259294
AGCGTCG417000.07.723326794
GTGTAGG289950.07.540145494
GCGTCGT385750.07.281576692-93
GAGCGTC469350.07.25256594
GTAGGGA269050.07.234645494
AAGAGCG563650.07.056847694
TAGGGAA249450.06.95492994
AGAGCGT517950.06.95329794
TGTAGGG282250.06.679751494
TCGGAAG765900.06.34743694
ATCGGAA784950.06.271256494
GATCGGA837700.06.005444594
CGGAAGA735050.05.94861694
AGATCGG890550.05.87606794
GAAGAGC734050.05.738947494
Produced by FastQC (version 0.11.5)