FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17140358
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA522650.08.97415494
TAGGGAA475200.08.47575494
TCGTGTA659400.08.46010494
GTGTAGG595250.08.32175994
GTCGTGT723900.08.15426894
TTTACGC7502.944539E-58.1494287
AGAGTGT273550.07.954597594
TGTAGGG552350.07.921464492-93
CGTGTAG623250.07.789542794
CGGTTCG5450.00692734777.76412158
GCGTCGT864800.07.65175294
AGCGTCG940550.07.57015394
CGTCGTG790800.07.500092594
GAGTGTA87050.07.39649194
CGATTCG8903.069888E-57.39576537
AAGAGTG333950.07.36027794
AGAGCGT1125850.07.209177594
GAGCGTC1030450.06.959876594
AAAGAGT358550.06.78975394
AAGAGCG1222300.06.736436494
Produced by FastQC (version 0.11.5)