FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10593862
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTAGCG1351.4603145E-524.3673487
GTACGAT3852.928573E-1017.0891113
ACTCGCG3001.6367285E-615.66967994
CGGTTCG4804.2018655E-1014.6859554
ATTCGCG2350.00101972613.99852853
CGCGCGT1351.833148E-413.9292688-89
CGATCGT2203.126661E-813.88418322-23
ACACGCG4455.384318E-712.67258557
CGTAACG1751.20646575E-412.08467246-47
CGATCGG1801.5641835E-411.75253786-87
GCGTCGG17700.011.15468694
AGTCGCG2950.005617629711.151373
TTCCGCG6202.3289431E-710.6115878
ATGCGCG4601.32596E-410.2163172
AGAGTGT308000.010.18020394
TACGCGC3700.002583902610.16411694
AACCGGT5103.3611504E-510.1361893
ACGATCG2808.492934E-610.07360386-87
AAGCGCG4400.00100068939.6126254
CGCGAGC4400.00100068939.6126252
Produced by FastQC (version 0.11.5)