FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11049725
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTAG206400.09.35850994
TCGTGTA215350.09.12233494
GTCGTGT239250.09.09501894
CGCGAAT2100.0073599768.953155570-71
CGTCGTG267550.08.642405594
TAGGGAA170350.08.58010894
GTGTAGG205400.08.00833394
GCGTCGT290800.07.919107494
GTAGGGA183050.07.77942394
AGCGTCG316750.07.745124394
TGTAGGG200050.07.541209794
GAGCGTC355350.07.498964394
AGAGCGT392450.07.412775594
AAGAGCG429900.07.08405894
GATCGGA653650.06.55728694
GAAGAGC541850.06.522488694
ATCGGAA608100.06.499732594
AGAGTGT103000.06.433634894
AGATCGG698950.06.414706794
CGGAAGA573200.06.28054294
Produced by FastQC (version 0.11.5)