FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12019738
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTA758.45248E-418.74813786-87
AGAGTGT183000.08.5783494
GTGTAGG425700.08.33300894
TCGTGTA474650.08.31281694
GTAGGGA367850.08.29315594
CGTGTAG446550.08.23775994
TGTAGGG398400.08.1747694
CGTCGTG573850.08.17419994
GTCGTGT521050.08.11216394
TAGGGAA341450.07.891330794
GCGTCGT625150.07.788266794
AAGAGTG226000.07.630428394
AGCGTCG682700.07.543576794
AAAGAGT245750.07.28415894
GAGCGTC749500.07.10883494
AGAGCGT818150.07.09656194
AAGAGCG889800.07.08862894
GGGAAAG392550.07.01926994
GGAAAGA377100.06.760081394
GAGTGTA58400.06.74024994
Produced by FastQC (version 0.11.5)