FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12770792
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAGCGC1050.002336542122.3813424
GATCGCG2458.0333644E-515.3472056
GCGCTAA1401.4816547E-515.1064612-13
CGCGAGT58900.014.36385994
GCGAGTA52350.014.18581694
TCACGCG92650.013.84940694
ACGCGAG70700.012.63130294
CGAGTAA45900.012.49283794
CGTTACG1350.00289810112.18463322-23
CGAACGT3501.2050074E-412.08616194
CACGCGA78650.012.07164994
GTCACGC124950.011.58586294
CGCGCTA1953.290852E-410.84734192-93
TAACCGT7502.5484042E-910.6529767
GCGACCG5354.9376176E-610.5422394
CGTAACG1800.002058973310.44593586-87
CGTACCG4501.0608352E-410.4440957
GACGCGA4501.0608352E-410.4440957
GTACGAT5002.69895E-510.3401796
TCGCGAC2756.8741356E-610.25408210-11
Produced by FastQC (version 0.11.5)