FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4035504
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC5701.1353811E-49.06920394
CAGTCAC75400.09.03749494
CTCGTAT7801.7875755E-79.03749394
GTCACAA56000.08.72763694
CACGTCT185950.07.885145794
TCGTATG6006.520713E-77.832493394
AACAACC36200.07.529579694
CGTCTGA156950.07.51569492-93
TGAACTC136900.07.483493394
TCTGAAC158800.07.368857494
CACACGT218150.07.216737394
ACACGTC198650.07.168122394
GAACTCC129250.07.090149494
ACGTCTG170850.07.06918794
CTGAACT147900.07.05401194
TCCAGTC98300.06.979923294
TCACAAC49750.06.895743494
ATCTCGT14353.6616257E-86.87731294
AATCTCG10950.06.86692992-93
GTCTGAA178750.06.83563194
Produced by FastQC (version 0.11.5)