FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4035504
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGA140050.08.15541594
TCGTGTA177150.08.11901294
TGTAGGG150800.07.854563794
TAGGGAA131450.07.83080594
GAGTGTA22250.07.816180794
AGAGTGT72950.07.73176894
GTCGTGT193100.07.5700994
CGTGTAG168050.07.383942694
CGTCGTG210000.07.31899394
AAGAGTG91900.07.313805694
GTGTAGG160900.07.288215692-93
AGCGTCG245100.07.057118494
GAGCGTC268250.06.99126994
GCGTCGT226350.06.66572594
AAAGAGT98850.06.46673694
AGGGAAA156750.06.41695794
GAGTGTC28800.06.3649594
GGGAAAG142550.06.23185794
GAAAGAG131300.06.228842794
AGAGCGT290750.06.22368792-93
Produced by FastQC (version 0.11.5)