FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15060459
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA5603.092282E-119.23195660-61
AGAGTGT626950.07.90431294
GAGTGTA184850.07.83407394
AAAGAGT756700.07.586619494
TAGGGAA1069250.07.176244794
GAAAGAG912050.07.08311794
CGTGTAG1407050.07.064018294
AAGAGTG699800.07.047870694
GATCTCG53950.06.9719694
GTAGGGA1143750.06.959566694
TGTAGGG1227900.06.896156394
GTCGCCG6159.816995E-76.877555458-59
GGAAAGA989700.06.817178794
GTGTAGA145900.06.799602594
GTGTAGG1318550.06.71444494
AGGGAAA1113500.06.705275594
TCGTGTA1483400.06.61802894
GTCGTGT1592500.06.56616394
GGGAAAG1017800.06.5042494
GAGTGTC163950.06.30910394
Produced by FastQC (version 0.11.5)