FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8153368
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATTGCG2450.001390514713.4350071
AATCTCG16100.010.21645694
ACGTCTG296100.08.88807694
ACACGTC349100.08.50795994
CGTCTGA266300.08.22380694
CACACGT391900.08.14240494
CACGTCT323450.07.72969994
AGTCACT119550.07.58692694
TCTGAAC274050.07.54537894
GCACACG426500.07.371658394
CTGAACT251000.07.320844794
GAACTCC219150.07.11958694
TGAACTC243150.06.842063494
AGCACAC498600.06.8335194
AACTCCA205250.06.70876594
ACTCCAG208150.06.683030694
CAGTCAC142150.06.57906794
GTCTGAA311050.06.557188594
GAGCACA546150.06.445075594
CTCGTAT11158.537207E-56.32229294
Produced by FastQC (version 0.11.5)