FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8153368
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTA500.001702679637.599894
TGTCGCG2300.00149899159.19678954-55
CGTGTAG291300.09.13211894
GTCGTGT338450.08.55424894
CGTCGTG373400.08.54655594
GTAGGGA240300.08.35160194
TAGGGAA222000.08.193294
TCGTGTA306250.08.13383694
GTGTAGG274450.08.04878394
TGTAGGG257650.07.843933694
AGAGTGT123700.07.6749894
AGCGTCG441500.07.536993594
GCGTCGT406850.07.526106492-93
GAGCGTC483550.07.17316194
GAGTGTA41450.07.030120494
GCGTCGG11452.34244E-66.978129494
AAGAGTG153600.06.94592794
AAAGAGT156900.06.88970394
AAGAGCG570550.06.69718794
AGAGCGT526150.06.628113394
Produced by FastQC (version 0.11.5)