FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473040
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGGGTA2206.152059E-414.9596294
AAAGAGT10450.012.142529594
AGAGTGT7452.0008883E-1110.7239494
GTAGGGA15550.010.27567294
CGTGTAG19950.010.12948294
TCGTGTA21200.09.08886594
GTGTAGG18350.08.96383194
GTCGTGT22600.08.62981292-93
TGTAGGG16800.08.53202892-93
GAGTGTC3153.3489882E-48.20566692-93
AAGAGTG9200.08.17323392-93
AGCGTCG29650.08.08364494
TAGGGAA13950.07.74845994
CTCTACC2800.00884917.552942880-81
GCGTCGT27150.07.183563790-91
CGTCGTG24900.07.172093490-91
AAGAGCG37900.06.94401394
GAGCGTC32250.06.776180392-93
GTAGATC5701.6301752E-56.595941592-93
GGAAAGA15950.06.33489692-93
Produced by FastQC (version 0.11.5)