FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005725594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15822468
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCGTA1550.008118249512.1286394
TGTAGGG577400.08.64432694
TCGTGTA699900.08.52807894
GTAGGGA532300.08.3701994
AGAGTGT264700.08.29175494
GTCGTGT767500.08.16884994
CGTGTAG661650.08.06925694
TAGGGAA489450.08.04672494
GTGTAGG623000.07.943717594
AAGAGTG322100.07.835505594
AGCGTCG1006600.07.661875794
GAGTGTA83300.07.616793694
AAAGAGT344400.07.532850794
GCGTCGT920350.07.506676794
CGTCGTG844000.07.33376194
GAGCGTC1103550.07.07393594
TACCGAT10152.3001472E-56.9485915
AGAGCGT1197200.06.92100394
AAGAGCG1296950.06.87428594
TAGACCG11151.16816445E-56.7489071
Produced by FastQC (version 0.11.5)