FastQCFastQC Report
Thu 23 Jun 2022
EGAF00005725951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78680986
Sequences flagged as poor quality0
Sequence length8
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT2609462733.16509912572778No Hit
TGTGCGGG2520728232.03732347736466No Hit
ACCATAAC2100768426.699823004251627No Hit
GTGTATTA52420436.662401256639057No Hit
TGTGCGGA2328500.29594189376325303No Hit
CAACGCCA1152070.14642292357647882No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)