FastQCFastQC Report
Thu 23 Jun 2022
EGAF00005725953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105648530
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC3085789729.208070382048856No Hit
GGCGAGTA2949106827.914319300041374No Hit
ACTTCTAT2232846221.134664154815972No Hit
CAAATACG2195236020.778670559827003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)