FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005725963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67266099
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG1769112626.300211046875187No Hit
GCGTACAC1740193325.87028720068931No Hit
TACAGACT1633463724.283609786855635No Hit
CGACTTGA1503152822.34636499434879No Hit
GCGTACAA771530.11469819291884312No Hit
TACAGACA735320.10931509496336335No Hit
CGACCTGA727310.10812430196078414No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)