FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005725967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67275916
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG1769972326.30915200024924No Hit
GCGTACAC1738834525.846314749545733No Hit
TACAGACT1634047124.288738038141318No Hit
CGACTTGA1500509522.303813745174423No Hit
GCGTACAA768210.1141879658687962No Hit
TACAGACA740070.11000519115934446No Hit
CGACCTGA721790.10728802265583422No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)