FastQCFastQC Report
Thu 23 Jun 2022
EGAF00005725978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences284111082
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC9387656233.042203542063874No Hit
CTGACTGA7122614025.06982110609821No Hit
ACCGTATG5990125921.083746039867606No Hit
GATTAGAT5496052719.34473186089939No Hit
TGACGCCA7612260.2679325264756832No Hit
CTGACTAA3932680.13842050694805352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)