FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005725981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77804021
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGGAAG2185444228.089090665378336No Hit
CAGCATCA1985709825.521943139673976No Hit
AGTTCGGC1856896023.8663243381727No Hit
GTAATCTT1652557921.240006348772127No Hit
GTAATCTA1551600.19942414030246586No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)