FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005725988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences264807355
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTG7703936229.09260658564412No Hit
TGCTGTAA6333328223.916738264312936No Hit
AAAGTGCT6175488723.320684200784378No Hit
CTGCAAGC6033311122.783774642513233No Hit
AAAGTGCA2797660.10564887821941352No Hit
GCTACCTA2787430.10526255964453857No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)