FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005726189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005726189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38400558
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGCCGTCTTCTGCTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAG1333060.34714599720139483Illumina Single End PCR Primer 1 (100% over 30bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1257510.32747180392534925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)