EGAF00005727580 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727580
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16723381
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG	1222441	7.309771869695488	TruSeq Adapter, Index 22 (97% over 40bp)
GATTGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG	25835	0.15448431151571562	TruSeq Adapter, Index 22 (97% over 40bp)
TATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG	21486	0.12847880461492803	TruSeq Adapter, Index 22 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	151885	44.07201	1
ATCGGAA	155550	43.715454	2
TCGGAAG	155520	43.655895	3
CGGAAGA	155770	43.523724	4
ACACGTC	159065	43.104588	13
CGTCTGA	159805	42.994064	16
GCACACG	159540	42.95369	11
ACGTCTG	159705	42.951443	15
CACGTCT	159660	42.92268	14
CACACGT	159780	42.8779	12
CCGTACG	147760	42.77011	33
CGTACGT	147795	42.769115	34
GAAGAGC	162400	42.737404	6
ACCGTAC	149150	42.713955	32
AGAGCAC	161920	42.708603	8
GTACGTA	148785	42.69171	35
CGTAATC	148030	42.66474	38
GTCACCG	151980	42.650837	29
ACGTAAT	148495	42.632656	37
TACGTAA	148720	42.58026	36