EGAF00005727586 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727586
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7315889
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	606936	8.29613461877292	TruSeq Adapter, Index 2 (100% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCACTCACCGATGTATCTCGTATGCC	12204	0.16681499678302938	TruSeq Adapter, Index 2 (98% over 51bp)
GATTGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	11418	0.15607125805216562	TruSeq Adapter, Index 2 (98% over 51bp)
TATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCC	10508	0.1436325783510384	TruSeq Adapter, Index 2 (98% over 51bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATTCGTATGCCG	10166	0.13895782180402136	TruSeq Adapter, Index 2 (97% over 41bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	79805	40.92049	45
TATCTCG	79515	40.71605	39
TCTCGTA	80535	40.555157	41
CTCGTAT	80675	40.521034	42
CGATGTA	80260	40.509068	34
ATCTCGT	80555	40.50878	40
CCGATGT	80775	40.448563	33
TATCGGA	1600	40.439075	1
ACCGATG	81180	40.432472	32
CACCGAT	81590	40.39751	31
GTCACCG	81325	40.352367	29
TCACCGA	82115	40.295403	30
GTATCTC	79940	40.17304	38
GATGTAT	81505	40.127697	35
ATGTATC	79985	40.0773	36
AGTCACC	83105	39.92123	28
CCAGTCA	85155	39.88099	26
CGTCTGA	88610	39.876858	16
CAGTCAC	85240	39.814823	27
ACGTCTG	88865	39.73097	15