EGAF00005727612 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727612
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9304230
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	102351	1.1000480426644654	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12975	41.471706	1
CGCCAAT	12465	41.40515	33
ACGCCAA	12580	41.00876	32
CTCGTAT	12310	40.994392	42
GTCACGC	12695	40.95606	29
TCTCGTA	12425	40.759827	41
TATCTCG	12430	40.743427	39
AGTCACG	12795	40.671783	28
CGTCTGA	13045	40.598804	16
ATCGGAA	13325	40.437954	2
ATCTCGT	12550	40.37178	40
ACACGTC	13150	40.360176	13
CGTATGC	12645	40.104053	44
TCGGAAG	13440	40.091946	3
ACGTCTG	13320	39.726837	15
TCGTATG	12815	39.642273	43
CGGAAGA	13695	39.444004	4
CACGTCT	13450	39.39304	14
GTATGCC	13060	38.84692	45
GCACACG	13845	38.399155	11