EGAF00005727616 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727616
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13996199
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC	293920	2.099998721081345	TruSeq Adapter, Index 9 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	37280	40.893826	45
CGGAAGA	41930	38.963306	4
CGTCTGA	40685	38.924076	16
ACACGTC	41045	38.80741	13
CGTATGC	39435	38.761806	44
TCGGAAG	42790	38.63691	3
ACGTCTG	41120	38.58343	15
GTCACGA	40215	38.534233	29
CGATCAG	40380	38.432766	33
CACGTCT	41450	38.42823	14
CTCGTAT	39570	38.42487	42
TCTCGTA	36675	38.408665	41
TCGTATG	39815	38.380554	43
ATCGGAA	43930	38.37199	2
GATCGGA	44095	38.360752	1
AGTCACG	40415	38.310143	28
ACGATCA	40565	38.174297	32
TCACGAT	40525	38.156326	30
ATCTCGT	36845	38.12031	40
GCACACG	41855	37.95426	11