EGAF00005727619 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727619
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9157660
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTATG	194206	2.1206945879187478	TruSeq Adapter, Index 13 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	24505	41.022232	45
CTCGTAT	24825	40.29406	44
TCTCGTA	23695	40.202675	43
GATCGGA	26560	40.103813	1
ATCTCGT	23830	40.003246	42
CGTCTGA	26195	39.834023	16
ACACGTC	26410	39.629	13
ACGTCTG	26575	39.26443	15
CACGTCT	26740	39.072628	14
AGTCAAC	26215	38.6708	34
AATCTCG	24685	38.643963	41
CACACGT	27305	38.527798	12
CGGAAGA	27535	38.525288	4
TCGGAAG	27665	38.43856	3
ATCGGAA	27805	38.334057	2
GCACACG	27450	38.332478	11
TCTGAAC	27510	37.83997	18
GTCAACA	26925	37.717915	35
CAGTCAA	27165	37.691113	33
AACAATC	25550	37.493553	38