EGAF00005727628 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727628
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13424054
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	93910	0.6995651239186017	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12130	42.129658	1
CCCGATC	11340	41.227013	38
TCCCGAT	11500	41.181946	37
CGTCCCG	11470	41.113125	35
GTCCCGA	11530	40.996746	36
TCGGAAG	12585	40.70607	3
ATCGGAA	12620	40.66449	2
ACACGTC	12440	40.49329	13
ACCCGTC	11855	40.214436	32
CACCCGT	11930	40.206787	31
CCGATCT	11620	40.175503	39
TCACCCG	11975	40.074184	30
TCGTATG	11790	39.958782	45
CTCGTAT	11820	39.705093	44
CGTCTGA	12670	39.633915	16
TCTCGTA	11845	39.62129	43
CCGTCCC	11970	39.564945	34
CGGAAGA	13105	39.10804	4
CCCGTCC	12185	39.10687	33
ACGTCTG	12895	38.92491	15