FastQCFastQC Report
Thu 9 May 2024
EGAF00005727666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005727666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11054974
Total Bases563.8 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACATTGGCATCTCGTAT159070.14388998110714687TruSeq Adapter, Index 5 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)