EGAF00005727695 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727695
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16770552
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC	138619	0.826561940239057	TruSeq Adapter, Index 6 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	17805	41.36288	1
CGCCAAT	17760	38.77738	33
ATCGGAA	19245	38.454704	2
GTCACGC	18050	38.38297	29
ACGCCAA	18015	38.27925	32
TCGGAAG	19295	38.193386	3
TATCTCG	17890	38.143585	39
AGTCACG	18295	38.139763	28
CTCGTAT	17995	37.896015	42
ACACGTC	19020	37.888252	13
TCTCGTA	18030	37.872364	41
CGTCTGA	18985	37.851444	16
CGGAAGA	19625	37.47089	4
CGTATGC	18255	37.454872	44
ACGTCTG	19375	37.112755	15
ATCTCGT	18430	37.09922	40
TCGTATG	18500	37.056137	43
CACGTCT	19465	37.02207	14
GCACACG	19970	36.356247	11
CACACGT	20210	35.879974	12