EGAF00005727704 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727704
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4849376
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG	31074	0.6407834739974793	TruSeq Adapter, Index 18 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	3755	40.623768	44
CGTCCGC	3810	40.4507	33
ACGTCCG	3830	40.4157	32
TCTCGTA	3780	40.414608	43
CGCACAT	3780	40.295567	37
GTCCGCA	3830	40.239468	34
TCGTATG	3810	40.037334	45
TCCGCAC	3830	39.769516	35
CCGCACA	3840	39.724545	36
GTCACGT	3955	39.365887	29
ATCTCGT	3885	39.322323	42
AGTCACG	3990	39.021378	28
CATCTCG	3915	38.963535	41
CACGTCC	4010	38.65764	31
TCACGTC	4080	38.380398	30
CGTCTGA	4425	35.743942	16
ACACGTC	4430	35.7036	13
ACGTCTG	4555	34.72381	15
CACGTCT	4590	34.459034	14
GCACATC	4510	33.823112	38