EGAF00005727706 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727706
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5239822
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	104888	2.001747387602098	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	12200	43.585396	1
CGTCCCG	11780	43.069176	35
ATCGGAA	12405	43.057545	2
TCGGAAG	12405	42.948723	3
ACACGTC	12265	42.815258	13
GTCCCGA	11795	42.7855	36
CGTCTGA	12295	42.783985	16
CCCGATC	11660	42.740585	38
CGGAAGA	12500	42.660343	4
ACCCGTC	12075	42.59458	32
TCCCGAT	11840	42.56588	37
CCGTCCC	11930	42.54651	34
CACCCGT	12090	42.467297	31
CCGATCT	11720	42.464184	39
CCCGTCC	12090	42.44869	33
TCACCCG	12125	42.38182	30
CACGTCT	12395	42.36621	14
ACGTCTG	12475	42.14863	15
TCTCGTA	12005	42.03787	43
GCACACG	12555	41.98758	11