EGAF00005727726 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727726
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11978489
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG	64698	0.5401182068957112	TruSeq Adapter, Index 22 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTACG	7880	41.11494	33
CGTACGT	7950	40.724617	34
ACCGTAC	8235	39.861633	32
GTACGTA	8240	39.264046	35
GTCACCG	8430	39.129494	29
CGTAATC	8135	38.941936	38
CTCGTAT	8295	38.678867	44
GATCGGA	8955	38.677296	1
TCTCGTA	8310	38.582138	43
CACCGTA	8585	38.419975	31
TCGTATG	8435	38.222977	45
CGTCTGA	8975	38.0791	16
ACGTAAT	8510	37.75423	37
ACACGTC	9105	37.658966	13
ATCGGAA	9265	37.553215	2
TACGTAA	8605	37.467846	36
ATCTCGT	8635	37.156055	42
TCGGAAG	9360	37.09312	3
ACGTCTG	9270	36.89158	15
CGGAAGA	9445	36.711655	4