FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005727727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005727727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11323050
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC126498011.17172493276988TruSeq Adapter, Index 9 (100% over 51bp)
GATCGGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGC278430.24589664445533668TruSeq Adapter, Index 9 (100% over 46bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)