EGAF00005727769 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727769
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7852030
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	192271	2.448678876672657	TruSeq Adapter, Index 7 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	23050	41.879745	1
ATCGGAA	23630	41.032597	2
TCGGAAG	23500	40.91763	3
CGGAAGA	23925	40.18137	4
GTATGCC	23775	38.597347	45
CGTCTGA	24515	38.45089	16
ACACGTC	24530	38.344852	13
ACGTCTG	24690	38.105473	15
TCTCGTA	24000	38.087013	41
CATCTCG	23960	38.06611	39
CTCGTAT	24075	37.98705	42
CACGTCT	24795	37.90782	14
ATCTCGT	24150	37.869076	40
CGTATGC	24350	37.69611	44
GCACACG	25215	37.65972	11
TCGTATG	24420	37.606476	43
CACACGT	25150	37.58714	12
GATCATC	24715	37.00744	36
CCAGATC	25165	36.8192	33
AGAGCAC	26020	36.805798	8