EGAF00005727784 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727784
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11670332
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATG	89063	0.7631573806126509	TruSeq Adapter, Index 18 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	11485	40.406204	1
ACGTCCG	11125	39.742588	32
GTCCGCA	11080	39.396313	34
CGTCCGC	11155	39.393654	33
TCCGCAC	11150	39.10862	35
CGCACAT	11195	38.670204	37
CCGCACA	11245	38.55812	36
ATCGGAA	12175	38.374866	2
CATCTCG	11270	38.310078	41
TCGGAAG	12200	38.253105	3
TCTCGTA	11315	38.23742	43
TCACGTC	11660	38.207047	30
CTCGTAT	11345	38.175804	44
GTCACGT	11620	38.145596	29
ACACGTC	12015	38.08792	13
ATCTCGT	11370	38.012714	42
CGTCTGA	12105	37.860664	16
CACGTCC	11715	37.79866	31
AGTCACG	11740	37.775505	28
TCGTATG	11545	37.709347	45