EGAF00005727785 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727785
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16708640
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	153533	0.9188838828294823	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCCG	19185	39.498493	35
CCCGATC	19015	39.402588	38
TCCCGAT	19270	39.24361	37
GATCGGA	20350	39.20083	1
GTCCCGA	19340	39.159813	36
ACCCGTC	19960	38.450256	32
CACCCGT	19980	38.35574	31
TCTCGTA	19670	38.23893	43
ATCGGAA	20955	38.218906	2
TCACCCG	20105	38.11708	30
CCGTCCC	20040	38.071835	34
CTCGTAT	19735	38.055996	44
CCGATCT	19705	37.942944	39
TCGTATG	19920	37.892708	45
TCGGAAG	21055	37.88543	3
CCCGTCC	20225	37.83497	33
ATCTCGT	20115	37.3932	42
CGGAAGA	21365	37.31465	4
ACACGTC	20895	37.201202	13
CGTCTGA	21075	36.92638	16