EGAF00005727792 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005727792
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16103723
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC	426498	2.648443468631446	TruSeq Adapter, Index 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	49255	43.575237	1
ATCGGAA	50465	42.576714	2
TCGGAAG	50425	42.545464	3
CGGAAGA	50755	42.184605	4
ACACGTC	50650	41.715206	13
CGTCTGA	50710	41.577114	16
ACGTCTG	51175	41.26967	15
GCACACG	51400	41.18093	11
CACGTCT	51465	41.05023	14
TCACGAT	49485	40.955933	35
CACACGT	51715	40.91704	12
ACGATCT	49280	40.583004	37
CATCACG	50360	40.55259	33
TCTCGTA	49595	40.520313	41
CACGATC	49480	40.468983	36
ATCTCGT	49615	40.46317	40
CTCGTAT	49695	40.42972	42
AGAGCAC	53420	39.960674	8
ATCACGA	51105	39.83375	34
GTATGCC	50595	39.79059	45