FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005729502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005729502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50965990
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACA639960.1255660882875031No Hit
GCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGG580290.11385828078685413No Hit
CTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTT564370.11073462911247284No Hit
CTCTGGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAAT562170.1103029687052091No Hit
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG554860.1088686788974373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)