FastQCFastQC Report
Thu 12 May 2022
EGAF00005729508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005729508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48818456
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1841140.37714015371563575No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG816660.16728509398166957TruSeq Adapter, Index 19 (97% over 37bp)
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA785480.16089816523488576No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCA534290.10944426427578946No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCG502280.10288731786191681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)